About the Workshop

Computational Biology is defined as the application of quantitative and analytical techniques to understand modern biology. From DNA sequence comparison to modelling complex biochemical networks, Computational Biology has changed the way in which modern biology is studied and understood.

This workshop provides an introduction to some of the fundamental techniques in Computational Biology. It starts with a brief introduction to Biology and then moves on to introduce some of the key topics in Computational Biology including state-of-the-art research areas in the field.

Date: 31st July – 4th August, 2017
Time: 9:00am – 5:00pm
Venue: Arif Habib Classroom & Math Lab - Habib University

Speakers

Dr. Aziz Mithani

Assistant Professor, Biology, LUMS

Dr. Aziz Mithani is interested in the development of computational tools and techniques to model and analyse biological systems, and to investigate how different organisms evolve over time. His prior work focused on modelling the evolution and analysis of the properties of metabolic networks and on the evolution of bread wheat.

He received his Masters in Computer Sciences from FAST-NU, Karachi, MPhil in Computational Biology from University of Cambridge, DPhil in Statistics (Computational Biology) from University of Oxford in November 2009. He also completed a research internship at Paulsson Lab at Department of Systems Biology at Harvard Medical School, and held a postdoctoral research position at Harberd Lab at the Department of Plant Sciences, University of Oxford.

Dr. Safee Ullah Chaudhary

Assistant Professor, Biology, LUMS

Dr. Safee Ullah Chaudhary is affiliated with the Department of Biology at LUMS since 2014 where he established the Biomedical Informatics Research Laboratory (BIRL). Prior to that, he headed the design and development of Ultimus XML Formula Engine and his graduate work on computational modelling of multiscale cancer systems biology led to the development of a next-generation modelling platform, Electronic Cancer System (ELECANS), for applications in the area.

He received his B.S. in computer systems engineering from the Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi, Pakistan in 2002. He obtained an M.S. and Ph.D. in 2008 and 2013, respectively, from Korea Advanced Institute of Science and Technology (KAIST).

Schedule

  Mon, 31 Jul Tue, 1 Aug Wed, 2 Aug Thu, 3 Aug Fri, 4 Aug
09:00 - 10:30 Molecular Biology Primer
(Lecture/Presentation)
Introduction to Bioinformatics
(Lecture/Presentation)
Genomics and Comparative Genomics
(Lecture/Presentation)
Introduction to Mass Spectrometry-based Proteomics
(Lecture/Presentation)
Introduction to Analysis of Biomolecular Networks
(Lecture/Presentation)
10:30 - 11:00 Tea Break
11:00 - 12:30 Molecular Biology Primer
(Lecture/Presentation)
DNA Sequence Analysis
(Lecture/Presentation)
HANDS2 - Genome Analysis in Polyploids
(Lecture/Presentation)
SPECTRUM - Search engines and related algorithms
(Lecture/Presentation)
ATLANTIS - Attractor Landscape Analysis
(Lecture/Presentation)
12:30 - 13:30 Lunch Break
13:30 - 16:30 BLAST and Expasy Translate Tool
(Hands-on Session)
DNA Sequence Analysis
(Hands-on Session)
MAPPS - Metabolic network Analysis and Pathway Prediction Server
(Hands-on Session)
Hands-on Session on SPECTRUM
(Hands-on Session)
Hands-on Session on ATLANTIS
(Hands-on Session)

Registration Closed

Eligibility: You must have programming experience in at least one computer language, preferably Matlab and/or Java.
Participation fee:
PKR 1,000 for Habib Student
PKR 2,000 for General Public

- Due to limited capacity, applicants will be shortlisted in case of over registration.
-The participation fee will have to be paid at Habib University before the beginning of the workshop. Further instructions will be shared with shortlisted candidates.

Deadline: 27th July, 2017

Contact information:
Email: compbio@habib.edu.pk

Location Map

Event Will Be Held At

Habib University City Campus